http://iet.metastore.ingenta.com
1887

Comparison of DNA detection methods using nanoparticles and silver enhancement

Buy article PDF
$19.95
(plus tax if applicable)
Buy Knowledge Pack
10 articles for $120.00
(plus taxes if applicable)

DNA microarrays are an emerging technology for the parallel detection of DNA molecules. Fluorescent molecules are the current standard for a DNA array's optical readout but they possess some drawbacks including the stability of the dyes and the cost of the scanners. Therefore alternative labelling strategies are of considerable interests. One such strategy is the use of nanoparticles which offers several advantages in terms of stability and versatility of the detection mode. The authors present a review on the different ways DNA can be detected, mainly onto a solid support, using nanoparticle labels.

References

    1. 1)
      • M. Horisberger . Colloidal gold: a cytochemical marker for light and fluorescent microscopy and for transmission and scanning electron microscopy. Scanning Electron Microsc. , 9 - 31
    2. 2)
      • M. Horisberger , A.J. Verkleij , J.L.M. Leunissen . (1989) Quantitative aspects of labeling colloidal gold with proteins, Immuno-gold labelling in cell biology.
    3. 3)
      • G.W. Hacker , M.A. Hayat . (1989) Silver-enhanced colloidal gold for light microscopy, Colloidal gold: principle, methods, and applications.
    4. 4)
      • J. Yguerabide , E.E. Yguerabide . Light-scattering submicroscopic particles as highly fluorescent analogs and their use as tracer labels in clinical and biological applications - I. Theory. Anal. Biochem. , 137 - 156
    5. 5)
      • M. Quinten . Local fields close to the surface of nanoparticles and aggregates of nanoparticles. Appl. Phys. B, Lasers Opt. , 245 - 255
    6. 6)
      • 1 onward link is available for this reference.
      • CrossRef
    7. 7)
      • 1 onward link is available for this reference.
      • CrossRef
    8. 8)
      • 1 onward link is available for this reference.
      • CrossRef
    9. 9)
      • 1 onward link is available for this reference.
      • CrossRef
    10. 10)
      • 1 onward link is available for this reference.
      • CrossRef
    11. 11)
      • J.M. Köhler , A. Csaki , J. Reichert , R. Möller , W. Straube , W. Fritzsche . Selective labeling of oligonucleotide monolayers by metallic nanobeads for fast optical readout of DNA-chips. Sens. Actuators B, Chem. , 166 - 172
    12. 12)
      • I. Alexandre , Y. Houbion , J. Collet , S. Hamels , J. Demarteau , J.L. Gala , J. Remacle . Compact disc with both numeric and genomic information as DNA microarray platform. Biotechniques , 435 - 436
    13. 13)
      • I. Alexandre , Y. Houbion , J. Collet , S. Hamels , J. Demarteau , J.L. Gala , J. Remacle . (2002) Biotechniques.
    14. 14)
      • I. Alexandre , S. Hamels , S. Dufour , J. Collet , N. Zammatteo , F. De Longueville , J. L. Gala , J. Remacle . Colorimetric silver detection of DNA microarrays. Anal. Biochem. , 1 - 8
    15. 15)
      • 1 onward link is available for this reference.
      • CrossRef
    16. 16)
      • L. Cognet , C. Tardin , D. Boyer , D. Choquet , P. Tamarat , B. Lounis . Single metallic nanoparticle imaging for protein detection in cells. Proc. Natl. Acad. Sci. USA , 11350 - 11355
    17. 17)
      • D.I. Stimpson , J.V. Hoijer , W.T. Hsieh , C. Jou , J. Gordon , T. Theriault , R. Gamble , J.D. Baldeschwieler . Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical wave guides. Proc. Natl. Acad. Sci. USA , 6379 - 6383
    18. 18)
      • T.A. Taton , G. Lu , C.A. Mirkin . Two-color labeling of oligonucleotide arrays via size-selective scattering of nanoparticle probes. J. Am. Chem. Soc. , 5164 - 5165
    19. 19)
      • 1 onward link is available for this reference.
      • CrossRef
    20. 20)
      • 1 onward link is available for this reference.
      • CrossRef
    21. 21)
      • U. Jonsson , L. Fagerstam , B. Ivarsson , B. Johnsson , R. Karlsson , K. Lundh , S. Lofas , B. Persson , H. Roos , I. Ronnberg . Real-time biospecific interaction analysis using surface plasmon resonance and a sensor chip technology. Biotechniques , 620 - 627
    22. 22)
      • A.J. Thiel , A.G. Frutos , C.E. Jordan , R.M. Corn , L.M. Smith . In situ surface plasmon resonance imaging detection of DNA hybridization to oligonucleotide arrays on gold surfaces. Anal. Chem. , 4948 - 4956
    23. 23)
      • B.P. Nelson , T.E. Grimsrud , M.R. Liles , R.M. Goodman , R.M. Corn . Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal. Chem. , 1 - 7
    24. 24)
      • L. He , M.D. Musick , S.R. Nicewarner , F.G. Salinas , S.J. Benkovic , M.J. Natan , C.D. Keating . Colloidal Au-enhanced surface plasmon resonance for ultrasensitive detection of DNA hybridization. J. Am. Chem. Soc. , 9071 - 9077
    25. 25)
      • E. Hutter , M.P. Pileni . Detection of DNA hybridization by gold nanoparticle enhanced transmission surface plasmon resonance spectroscopy. J. Phys. Chem. B , 6497 - 6499
    26. 26)
      • M. Han , X. Gao , J.Z. Su , S. Nie . Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules. Nature Biotechnol , 631 - 635
    27. 27)
      • S. Yamaguchi , T. Shimomura , T. Tatsuma , N. Oyama . Adsorption, Immobilization, and Hybridization of DNA Studied by the Use of Quartz-Crystal Oscillators. Anal. Chem. , 1925 - 1927
    28. 28)
      • F. Caruso , E. Rodda , D.F. Furlong , K. Niikura , Y. Okahata . Quartz crystal microbalance study of DNA immobilization and hybridization for nucleic acid sensor development. Anal. Chem. , 2043 - 2049
    29. 29)
      • A. Bardea , A. Dagan , I. Ben-Dov , B. Amit , I. Willner . Amplified microgravimetric quartz crystal-microbalance analyses of oligonucleotide complexes: a route to a Tay-Sachs biosensor device. Chem. Commun. , 839 - 840
    30. 30)
      • X.C. Zhou , S.J. O'Shea , S.F.Y. Li . Amplified microgravimetric gene sensor using Au nanoparticle modified oligonucleotides. Chem. Commun. , 953 - 954
    31. 31)
      • F. Patolsky , K.T. Ranjit , A. Lichtenstein , I. Willner . Dendritic amplification of DNA analysis by oligonucleotide-functionalized Au-nanoparticles. Chem. Commun. , 1025 - 1026
    32. 32)
      • Y. Weizmann , F. Patolsky , I. Willner . Amplified detection of DNA and analysis of single-base mismatches by the catalyzed deposition of gold on Au-nanoparticles. Analyst , 1502 - 1504
    33. 33)
      • P. Vettiger , J. Brugger , M. Despont , U. Drechsler , U. Durig , W. Haberle , M. Lutwyche , H. Rothuizen , R. Stutz , R. Widmer , G. Binnig . Ultrahigh density, high-data-rate NEMS-based AFM data storage system. Microelectron. Eng. , 11 - 17
    34. 34)
      • 1 onward link is available for this reference.
      • CrossRef
    35. 35)
      • 1 onward link is available for this reference.
      • CrossRef
    36. 36)
      • G.H. Wu , H.F. Ji , K. Hansen , T. Thundat , R. Datar , R. Cote , M.F. Hagan , A.K. Chakraborty , A. Majumdar . Origin of nanomechanical cantilever motion generated from biomolecular interactions. Proc. Natl. Acad. Sci. USA , 1560 - 1564
    37. 37)
      • K.M. Hansen , H.F. Ji , G. Wu , R. Datar , R. Cote , A. Majumdar , T. Thundat . Cantilever-based optical deflection assay for discrimination of DNA single-nucleotide mismatches. Anal Chem , 1567 - 1571
    38. 38)
      • 1 onward link is available for this reference.
      • CrossRef
    39. 39)
      • 1 onward link is available for this reference.
      • CrossRef
    40. 40)
      • J. Wang . (1985) Stripping analysis: Principles, Instrumentation, and applications.
    41. 41)
      • J. Wang , D. Xu , A.N. Kawde , R. Polsky . Metal nanoparticle-based electrochemical stripping potentiometric detection of DNA hybridization. Anal. Chem. , 5576 - 5581
    42. 42)
      • 1 onward link is available for this reference.
      • CrossRef
    43. 43)
      • J. Wang , D.K. Xu , R. Polsky . Magnetically-induced solid-state electrochemical detection of DNA hybridization. J. Am. Chem. Soc. , 4208 - 4209
    44. 44)
      • 1 onward link is available for this reference.
      • CrossRef
    45. 45)
      • 1 onward link is available for this reference.
      • CrossRef
    46. 46)
      • J. Wang , G. Liu , Q. Zhu . Indium microrod tags for electrochemical detection of DNA hybridization. Anal. Chem. , 6218 - 6222
    47. 47)
      • J. Wang , G. Liu , A. Merkoci . Electrochemical coding technology for simultaneous detection of multiple DNA targets. J. Am. Chem. Soc. , 3214 - 3215
    48. 48)
      • H. Cai , Y. Xu , N. Zhu , P. He , Y. Fang . An electrochemical DNA hybridization detection assay based on a silver nanoparticle label. Analyst , 803 - 808
    49. 49)
      • M. Ozsoz , A. Erdem , K. Kerman , D. Ozkan , B. Tugrul , N. Topcuoglu , H. Ekren , M. Taylan . Electrochemical genosensor based on colloidal gold nanoparticles for the detection of Factor V Leiden mutation using disposable pencil graphite electrodes. Anal. Chem. , 2181 - 2187
    50. 50)
      • Hofmann, F.: `Passive DNA Sensor with Gold Electrodes Fabricated in a CMOS Backend Process', presented at ESSDERC, 2002.
    51. 51)
      • Xue, M., Li, J., Lu, Z., Ko, P.K., Chan, M.: `Array-Based Electrical Detector of Integrated DNA Identification System for Genetic Chip Applications', presented at ESSDERC, 2002.
    52. 52)
      • S.J. Park , T.A. Taton , C.A. Mirkin . Array-based electrical detection of DNA with nanoparticle probes. Science , 1503 - 1506
    53. 53)
      • R. Möller , A. Csaki , J.M. Köhler , W. Fritzsche . Electrical classification of the concentration of bioconjugated metal colloids after surface adsorption and silver enhancement. Langmuir , 5426 - 5430
    54. 54)
      • 1 onward link is available for this reference.
      • CrossRef
    55. 55)
      • Lillis, B., Hurley, E., Galvin, S., Mathewson, A., Berney, H.A.: `A Novel, High Surface Area, Capacitance Based Silicon Sensor for DNA Hybridisation Detection', presented at the 16th European Conference on Solid-State Transducers, 2002, Prague, Czech Republic.
    56. 56)
      • Guiducci, C., Stagni, C., Zuccheri, G., Bogliolo, A., Benini, L., Samori, B., Ricco, B.: `Detection of DNA sequences based on capacitance measurements', presented at ESSDERC, 2002.
    57. 57)
      • 1 onward link is available for this reference.
      • CrossRef
    58. 58)
      • I. Willner , F. Patolsky , J. Wasserman . Photoelectrochemistry with controlled DNA-cross-linked CDS nanoparticle arrays. Angew. Chem. Int. Ed. , 1861 - 1864
    59. 59)
      • 1 onward link is available for this reference.
      • CrossRef

Related content

content/journals/10.1049/ip-nbt_20055017
pub_keyword,iet_inspecKeyword,pub_concept
6
6
Loading
This is a required field
Please enter a valid email address